Class: GlyDevKit::GlyCosmosRdfNamespace

Inherits:
Object
  • Object
show all
Defined in:
lib/glydevkit/gly_cosmos_rdf_namespace.rb

Constant Summary collapse

GLYTOUCAN = 
RDF::Vocabulary.new("http://rdf.glycoinfo.org/glycan/")
GLYCAN = 
RDF::Vocabulary.new("http://purl.jp/bio/12/glyco/glycan#")
RDF = 
RDF::Vocabulary.new("http://www.w3.org/1999/02/22-rdf-syntax-ns#")

Class Method Summary collapse

Instance Method Summary collapse

Class Method Details

.anomeric_status(status) ⇒ {RDF::URI}

Returns the RDF URI for the given anomeric status.

Parameters:

  • status (String) —

    The anomeric status.

Returns:

  • ({RDF::URI}) —

    The RDF URI for the anomeric status.



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# File 'lib/glydevkit/gly_cosmos_rdf_namespace.rb', line 46

def self.anomeric_status(status)
  return GLYCAN[status]
end

.archetype ⇒ {RDF::URI}

Returns the RDF URI for the archetype class.

Returns:

  • ({RDF::URI}) —

    The RDF URI for the archetype class.



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# File 'lib/glydevkit/gly_cosmos_rdf_namespace.rb', line 96

def self.archetype
  return GLYCAN["Archetype"]
end

.has_anomer ⇒ {RDF::URI}

Returns the RDF URI for the property indicating an anomer.

Returns:

  • ({RDF::URI}) —

    The RDF URI for the property.



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# File 'lib/glydevkit/gly_cosmos_rdf_namespace.rb', line 75

def self.has_anomer
  return GLYCAN["has_anomer"]
end

.has_archetype ⇒ {RDF::URI}

Returns the RDF URI for the property indicating an archetype.

Returns:

  • ({RDF::URI}) —

    The RDF URI for the property.



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# File 'lib/glydevkit/gly_cosmos_rdf_namespace.rb', line 68

def self.has_archetype
  return GLYCAN["has_archetype"]
end

.has_reducing_end_monosaccharide_residue ⇒ {RDF::URI}

Returns the RDF URI for the property indicating a reducing end monosaccharide residue.

Returns:

  • ({RDF::URI}) —

    The RDF URI for the property.



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# File 'lib/glydevkit/gly_cosmos_rdf_namespace.rb', line 38

def self.has_reducing_end_monosaccharide_residue
  return GLYCAN["has_reducing_end_monosaccharide_residue"]
end

.has_ring_type ⇒ {RDF::URI}

Returns the RDF URI for the property indicating a ring type.

Returns:

  • ({RDF::URI}) —

    The RDF URI for the property.



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# File 'lib/glydevkit/gly_cosmos_rdf_namespace.rb', line 61

def self.has_ring_type
  return GLYCAN["has_ring_type"]
end

.is_archetype_of ⇒ {RDF::URI}

Returns the RDF URI for the property indicating that something is an archetype of another entity.

Returns:

  • ({RDF::URI}) —

    The RDF URI for the property.



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# File 'lib/glydevkit/gly_cosmos_rdf_namespace.rb', line 82

def self.is_archetype_of
  return GLYCAN["is_archetype_of"]
end

.red_end_ms(id) ⇒ {RDF::URI}

Returns the RDF URI for the reducing end monosaccharide of a saccharide with the given ID.

Parameters:

  • id (String) —

    The identifier of the saccharide.

Returns:

  • ({RDF::URI}) —

    The RDF URI for the reducing end monosaccharide.

Raises:

  • (ArgumentError) —

    If the id is nil or empty.



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# File 'lib/glydevkit/gly_cosmos_rdf_namespace.rb', line 28

def self.red_end_ms(id)
  if id.nil? || id.empty?
    raise ArgumentError, "please assign 'id'"
  end
  return GLYTOUCAN[id + "/red_end_ms"]
end

.ring_status(status) ⇒ {RDF::URI}

Returns the RDF URI for the given ring status.

Parameters:

  • status (String) —

    The ring status.

Returns:

  • ({RDF::URI}) —

    The RDF URI for the ring status.



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# File 'lib/glydevkit/gly_cosmos_rdf_namespace.rb', line 54

def self.ring_status(status)
  return GLYCAN[status]
end

.saccharide(id) ⇒ RDF::URI

Returns the RDF URI for a saccharide with the given ID.

Parameters:

  • id (String) —

    The identifier of the saccharide.

Returns:

  • (RDF::URI) —

    The RDF URI for the saccharide.

Raises:

  • (ArgumentError) —

    If the id is nil or empty.



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# File 'lib/glydevkit/gly_cosmos_rdf_namespace.rb', line 16

def self.saccharide(id)
  if id.nil? || id.empty?
    raise ArgumentError, "please assign 'id'"
  end
  return GLYTOUCAN[id]
end

.type ⇒ {RDF::URI}

Returns the RDF URI for the RDF type property.

Returns:

  • ({RDF::URI}) —

    The RDF URI for the type property.



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# File 'lib/glydevkit/gly_cosmos_rdf_namespace.rb', line 89

def self.type
  return RDF["type"]
end

Instance Method Details

#has_message ⇒ {RDF::URI}

Returns the RDF URI for the property indicating a message in the archetype logs.

Returns:

  • ({RDF::URI}) —

    The RDF URI for the archetype logs class.



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# File 'lib/glydevkit/gly_cosmos_rdf_namespace.rb', line 114

def has_message
  RDF::URI.new("http://rdf.glycoinfo.org/glycan/archetype/logs#has_message")
end