Class: WurcsVerify

Inherits:
Object
  • Object
show all
Defined in:
lib/wurcsverify.rb

Constant Summary collapse

@@gtc_version = 
"1.2.14"
@@v1215 = 
"1.2.15"
@@v1216 = 
"1.2.16"
@@v130 = 
"1.3.0"
@@v131 = 
"1.3.1"

Instance Method Summary collapse

Constructor Details

#initialize ⇒ WurcsVerify

Initializes the WurcsVerify class.

Sets up custom class loaders for different versions of the WURCS Framework. Loads the WURCSValidator classes for each version.



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# File 'lib/wurcsverify.rb', line 24

def initialize
    @wfw_glytoucan_loader = self.create_custom_classloader("jar/wurcsframework-" + @@gtc_version + ".jar")
    @wfw_v131_loader = self.create_custom_classloader("jar/wurcsframework-" + @@v131 + ".jar")
    @wfw_v130_loader = self.create_custom_classloader("jar/wurcsframework-" + @@v130 + ".jar")
    @wfw_v1216_loader = self.create_custom_classloader("jar/wurcsframework-" + @@v1216 + ".jar")
    @wfw_v1215_loader = self.create_custom_classloader("jar/wurcsframework-" + @@v1215 + ".jar")
    @validator_glytoucan = java.lang.Class.forName("org.glycoinfo.WURCSFramework.util.validation.WURCSValidator",true,@wfw_glytoucan_loader)
    @validator_v131 = java.lang.Class.forName("org.glycoinfo.WURCSFramework.util.validation.WURCSValidator", true, @wfw_v131_loader)
    @validator_v130 = java.lang.Class.forName("org.glycoinfo.WURCSFramework.util.validation.WURCSValidator", true, @wfw_v130_loader)
    @validator_v1216 = java.lang.Class.forName("org.glycoinfo.WURCSFramework.util.validation.WURCSValidator", true, @wfw_v1216_loader)
    @validator_v1215 = java.lang.Class.forName("org.glycoinfo.WURCSFramework.util.validation.WURCSValidator", true, @wfw_v1215_loader)
end

Instance Method Details

#create_custom_classloader(jar_path) ⇒ URLClassLoader

Creates a custom class loader for a given JAR file.

Parameters:

  • jar_path (String) —

    The path to the JAR file.

Returns:

  • (URLClassLoader) —

    The custom class loader.



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# File 'lib/wurcsverify.rb', line 41

def create_custom_classloader(jar_path)
  absolute_path = File.dirname(File.expand_path(__FILE__)) + "/" + jar_path
  url = URL.new("file:#{absolute_path}")
  URLClassLoader.newInstance([url].to_java(URL), java.lang.Thread.currentThread.getContextClassLoader)
end

#dovalidator(validator, version) ⇒ Hash

Performs validation and returns basic reports.

Parameters:

  • validator (Object) —

    The validator instance.

  • version (String) —

    The version of the WURCS Framework.

Returns:

  • (Hash) —

    The validation report.



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# File 'lib/wurcsverify.rb', line 120

def dovalidator(validator, version)
  return { 
    "VALIDATOR" => ["WURCSFramework-" + version],
    "Report" => validator.getReport().getResults() 
  }
end

#dovalidatorv3(validator, version) ⇒ Hash

Performs validation and returns detailed reports for v3 style.

Parameters:

  • validator (Object) —

    The validator instance.

  • version (String) —

    The version of the WURCS Framework.

Returns:

  • (Hash) —

    The validation report.



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# File 'lib/wurcsverify.rb', line 95

def dovalidatorv3(validator, version)
  if validator.getReport().respond_to?(:isStandardized)
    flag = validator.getReport().isStandardized()
  else
    flag = "undef"
  end
  reports = { 
    "VALIDATOR" => ["WURCSFramework-" + version],
    "WARNING" => validator.getReport().hasWarning(),
    "FLAG" => flag,
    "ERROR" => validator.getReport().hasError(),
    "UNVERIFIABLE" => validator.getReport().hasUnverifiable() 
  }
  return { 
    "message" => reports,
    "StandardWURCS" => validator.getReport().standard_string(),
    "RESULTS" => validator.getReport().getResults() 
  }
end

#validatorVerify(w, style) ⇒ Hash

Verifies the WURCS string using different versions of the WURCS Framework.

Parameters:

  • w (String) —

    The WURCS string to verify.

  • style (String) —

    The verification style (“v3” or “wfw”).

Returns:

  • (Hash) —

    The verification results.



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# File 'lib/wurcsverify.rb', line 52

def validatorVerify(w, style)
  v_glytoucan = @validator_glytoucan.new_instance
  v_glytoucan.start(w)

  v_131 = @validator_v131.new_instance
  v_131.start(w)

  v_130 = @validator_v130.new_instance
  v_130.start(w)

  v_1216 = @validator_v1216.new_instance
  v_1216.start(w)

  v_1215 = @validator_v1215.new_instance
  v_1215.start(w)

  if (style == "v3")
    ret = {
      @@gtc_version => self.dovalidatorv3(v_glytoucan, @@gtc_version),
      @@v131 => self.dovalidatorv3(v_131, @@v131),
      @@v130 => self.dovalidatorv3(v_130, @@v130),
      @@v1215 => self.dovalidatorv3(v_1215, @@v1215),
      @@v1216 => self.dovalidatorv3(v_1216, @@v1216)
    }
  elsif (style == "wfw")
    ret = {
      @@gtc_version => self.dovalidator(v_glytoucan, @@gtc_version),
      @@v131 => self.dovalidator(v_131, @@v131),
      @@v130 => self.dovalidator(v_130, @@v130),
      @@v1215 => self.dovalidator(v_1215, @@v1215),
      @@v1216 => self.dovalidator(v_1216, @@v1216)
    }
  else
    pp "strange second paramerters"
  end
  return ret
end